Gene: Potri.005G108200

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.005G108200
  • Transcript Identifier Potri.005G108200.1
  • Gene Type Coding gene
  • Location Chr05 : 7803673-7805292 : positive

Gene Family Information

  • ID HOM05D001172
  • #Genes/#Species 529/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.005G108200.v4.1
  • pacid 42802971
  • synonym POPTR_0005s11000

Descriptions

  • Description PF13488//PF13639 - Glycine zipper (Gly-zipper_Omp) // Ring finger domain (zf-RING_2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009299
ISO
PLAZA Integrative OrthologymRNA transcription AT2G17730
GO:0010200
ISO
PLAZA Integrative Orthologyresponse to chitin AT1G74410
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT2G17730
GO:0009788
ISO
PLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathway AT5G66070

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
ISO
PLAZA Integrative Orthologyubiquitin protein ligase activity AT5G66070
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G17730

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G66070
GO:0031351
ISO
PLAZA Integrative Orthologyintegral component of plastid membrane AT2G17730
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G66070
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT2G17730

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044523 RING domain-containing protein NIP1/2-like
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.3.3.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ATL-subclass ligase