Gene: Potri.005G000500

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.005G000500
  • Transcript Identifier Potri.005G000500.1
  • Gene Type Coding gene
  • Location Chr05 : 118535-124201 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.005G000500.v4.1
  • pacid 42803642
  • synonym POPTR_0005s00240

Descriptions

  • Description PF00098//PF00271//PF04851//PF08152 - Zinc knuckle (zf-CCHC) // Helicase conserved C-terminal domain (Helicase_C) // Type III restriction enzyme, res subunit (ResIII) // GUCT (NUC152) domain (GUCT)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc08g042050.3
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing Zm00001eb063300
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT5G26742
GO:0042254
ISO
PLAZA Integrative Orthologyribosome biogenesis Zm00001eb063300
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization Zm00001eb063300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003723
IEA
InterProRNA binding
GO:0004386
IEA
InterProhelicase activity
GO:0008270
IEA
InterProzinc ion binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc08g042050.3
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G26742

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma Zm00001eb063300
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G26742
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G26742

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR012562 GUCT
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
16.11.4.1.1.5 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.basal splicing factor (RH3)