Gene: PGSC0003DMG400034487
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400034487
- Transcript Identifier PGSC0003DMT400084916
- Gene Type Coding gene
- Location ST4.03ch01 : 87094453-87096858 : positive
Gene Family Information
- ID HOM05D000113
- #Genes/#Species 2932/100
- Phylogenetic origin
- ID ORTHO05D003010
- #Genes/#Species 249/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37438187
- id PGSC0003DMG400034487.v4.03
- uniprot M1D8C5
Descriptions
- Description ATP-dependent RNA helicase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0000390 | IBA | GOA Database | spliceosomal complex disassembly |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003724 | IEA | GOA Database | RNA helicase activity | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0003723 | IBA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071013 | IBA | GOA Database | catalytic step 2 spliceosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR044762 | DHX8/ Prp22, DEXH-box helicase domain |
| IPR001650 | Helicase, C-terminal |
| IPR007502 | Helicase-associated domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR011709 | Domain of unknown function DUF1605 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |