Gene: PGSC0003DMG400030803

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400030803
  • Transcript Identifier PGSC0003DMT400079144
  • Gene Type Coding gene
  • Location ST4.03ch04 : 63792257-63801844 : positive

Gene Family Information

  • ID HOM05D000752
  • #Genes/#Species 778/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37474574
  • id PGSC0003DMG400030803.v4.03
  • uniprot M1D1B5

Descriptions

  • Description TRANSPARENT TESTA 1 protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010468
IEA
InterProregulation of gene expression
GO:0030154
IEA
GOA Databasecell differentiation
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT1G13290
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT1G13290
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT1G13290
GO:0010588
ISO
PLAZA Integrative Orthologycotyledon vascular tissue pattern formation AT1G13290
GO:0010305
ISO
PLAZA Integrative Orthologyleaf vascular tissue pattern formation AT1G13290
GO:0009813
ISO
PLAZA Integrative Orthologyflavonoid biosynthetic process AT1G34790

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IEA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G34790

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR013087 Zinc finger C2H2-type
IPR000504 RNA recognition motif domain
IPR043584 Zinc finger protein WIP
IPR035979 RNA-binding domain superfamily
IPR036236 Zinc finger C2H2 superfamily
Mapman id Description
15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)