Gene: PGSC0003DMG400021170

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400021170
  • Transcript Identifier PGSC0003DMT400054539
  • Gene Type Coding gene
  • Location ST4.03ch02 : 29529982-29536039 : positive

Gene Family Information

  • ID HOM05D001072
  • #Genes/#Species 571/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37427928
  • id PGSC0003DMG400021170.v4.03
  • uniprot M1BWI7

Descriptions

  • Description 40S ribosomal protein S4
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IBA
IEA
GOA Databasetranslation
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G07090
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G07090
GO:0003735
IBA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0019843
IEA
GOA DatabaserRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT2G17360
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G58420
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT5G07090
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G17360
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT5G07090
GO:0022627
IBA
GOA Databasecytosolic small ribosomal subunit
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000876 Ribosomal protein S4e
IPR036986 RNA-binding S4 domain superfamily
IPR002942 RNA-binding S4 domain
IPR041982 Ribosomal protein S4, KOW domain
IPR013843 Ribosomal protein S4e, N-terminal
IPR013845 Ribosomal protein S4e, central region
IPR038237 Ribosomal protein S4e, central domain superfamily
IPR014722 Ribosomal protein L2, domain 2
IPR005824 KOW
IPR032277 40S ribosomal protein S4, C-terminal domain
Mapman id Description
17.1.3.1.5 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS4