Gene: PGSC0003DMG400008740
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400008740
- Transcript Identifier PGSC0003DMT400022547
- Gene Type Coding gene
- Location ST4.03ch12 : 6539908-6547855 : positive
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001122
- #Genes/#Species 480/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- pacid 37446973
- id PGSC0003DMG400008740.v4.03
- uniprot M1AGW8
Descriptions
- Description Aconitase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT2G05710 |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT2G05710 |
| GO:1990641 | ISO | PLAZA Integrative Orthology | response to iron ion starvation | AT4G35830 |
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT2G05710 |
| GO:0006102 | ISO | PLAZA Integrative Orthology | isocitrate metabolic process | AT4G35830 |
| GO:0090351 | ISO | PLAZA Integrative Orthology | seedling development | AT2G05710 |
| GO:0006101 | IBA | GOA Database | citrate metabolic process | |
| GO:0006099 | IBA | GOA Database | tricarboxylic acid cycle |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005507 | ISO | PLAZA Integrative Orthology | copper ion binding | AT4G35830 |
| GO:0048027 | ISO | PLAZA Integrative Orthology | mRNA 5'-UTR binding | AT4G35830 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G05710 |
| GO:0005524 | ISO | PLAZA Integrative Orthology | ATP binding | AT2G05710 |
| GO:0003994 | IBA IEA | GOA Database | aconitate hydratase activity | |
| GO:0051539 | IBA IEA | GOA Database | 4 iron, 4 sulfur cluster binding | |
| GO:0016829 | IEA | GOA Database | lyase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding | |
| GO:0047780 | IEA | GOA Database | citrate dehydratase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT2G05710 |
| GO:0048046 | ISO | PLAZA Integrative Orthology | apoplast | AT4G35830 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT2G05710 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G35830 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G05710 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G35830 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT4G35830 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT2G05710 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT2G05710 |
| GO:0005829 | IBA | GOA Database | cytosol | |
| GO:0005739 | IBA | GOA Database | mitochondrion |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001030 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain |
| IPR044137 | Aconitase A, swivel domain |
| IPR006249 | Aconitase/Iron-responsive element-binding protein 2 |
| IPR015931 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 |
| IPR036008 | Aconitase, iron-sulfur domain |
| IPR015928 | Aconitase/3-isopropylmalate dehydratase, swivel |
| IPR000573 | Aconitase A/isopropylmalate dehydratase small subunit, swivel domain |