Gene: PGR142G2692
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR142G2692
- Transcript Identifier PGR142G2692.01
- Gene Type Coding gene
- Location NC_045128.1 : 30316828-30322359 : positive
Gene Family Information
- ID HOM05D000131
- #Genes/#Species 2694/97
- Phylogenetic origin
- ID ORTHO05D000086
- #Genes/#Species 2333/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- pid XP_031381507.1
- name LOC116196098
- name XM_031525647.1
- id gene-LOC116196098
- uniprot A0A6P8CJD0
Descriptions
- product probable pectate lyase 12, transcript variant X2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045490 | IEA | GOA Database | pectin catabolic process | |
| GO:0042547 | ISO | PLAZA Integrative Orthology | cell wall modification involved in multidimensional cell growth | AT3G54920 |
| GO:0098542 | ISO | PLAZA Integrative Orthology | defense response to other organism | AT3G54920 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030570 | IEA | GOA Database | pectate lyase activity | |
| GO:0030570 | IEA | InterPro | pectate lyase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016829 | IEA | GOA Database | lyase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0031225 | ISO | PLAZA Integrative Orthology | anchored component of membrane | AT5G04310 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 21.3.5.2 | Cell wall organisation.pectin.modification and degradation.pectate lyase |