Gene: Os02g0139400
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os02g0139400
- Transcript Identifier Os02t0139400-02
- Gene Type Coding gene
- Location chr02 : 2106976-2110254 : positive
Gene Family Information
- ID HOM05D000159
- #Genes/#Species 2316/100
- Phylogenetic origin
- ID ORTHO05D000148
- #Genes/#Species 1671/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Os02t0139400-02
- MSU-ID LOC_Os02g04680.1
- MSU-ID LOC_Os02g04680.2
- symbol LCRN1
- symbol OsSPL3
- name SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE3
- name lower crown root number1
- uniprot A3A2Z8
Descriptions
- Description Similar to Squamosa promoter-binding-like protein 3.
- Description SBP-domain transcription factor, OsmiR156 target gene, Regulation of crown root development
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT3G57920 |
| GO:0010358 | ISO | PLAZA Integrative Orthology | leaf shaping | AT1G27370 |
| GO:0010468 | ISO | PLAZA Integrative Orthology | regulation of gene expression | AT1G69170 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT1G27370 |
| GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | AT5G43270 |
| GO:0048653 | ISO | PLAZA Integrative Orthology | anther development | AT3G57920 |
| GO:0042127 | ISO | PLAZA Integrative Orthology | regulation of cell population proliferation | AT3G57920 |
| GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT1G69170 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT3G57920 |
| GO:0008361 | ISO | PLAZA Integrative Orthology | regulation of cell size | AT3G57920 |
| GO:0090356 | ISO | PLAZA Integrative Orthology | negative regulation of auxin metabolic process | AT5G43270 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT1G27370 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G57920 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G69170 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.18 | RNA biosynthesis.transcriptional regulation.transcription factor (SBP) |