Gene: Os01g0639100

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os01g0639100
  • Transcript Identifier Os01t0639100-01
  • Gene Type Coding gene
  • Location chr01 : 25637020-25640207 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os01t0639100-01
  • MSU-ID LOC_Os01g45190.1
  • MSU-ID LOC_Os01g45190.3
  • symbol OsRH2
  • name RNA helicase 2
  • name initiation factor eIF-4A
  • uniprot Q5VNM3

Descriptions

  • Description DEAD box RNA helicase homologous to eukaryotic initiation factor 4AIII (eIF4AIII), Core components of the exon junction complex (EJC), Regulation of plant height, pollen, and seed development
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001666
ISO
PLAZA Integrative Orthologyresponse to hypoxia AT3G19760
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G19760
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT3G19760
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G19760
GO:0035145
ISO
PLAZA Integrative Orthologyexon-exon junction complex AT3G19760
GO:0005730
IBA
GOA Databasenucleolus
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
17.3.1.1.1 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.helicase component eIF4A3