Gene: Nitab4.5_0005625g0030

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0005625g0030
  • Transcript Identifier Nitab4.5_0005625g0030.1
  • Gene Type Coding gene
  • Location Nitab4.5_0005625 : 101714-121572 : negative

Gene Family Information

  • ID HOM05D000974
  • #Genes/#Species 616/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0005625g0030.1
  • SR1-identifier Nta05g15370.1

Descriptions

  • Description Peptidase M41, RNA recognition motif domain, Peptidase, FtsH, ATPase, AAA-type, core, AAA ATPase domain, Nucleotide-binding, alpha-beta plait, P-loop containing nucleoside triphosphate hydrolase, ATPase, AAA-type, conserved site
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010304
ISO
PLAZA Integrative OrthologyPSII associated light-harvesting complex II catabolic process AT5G53170
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT5G53180
GO:0000381
ISO
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome AT5G53180
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT5G53170
GO:0006417
ISO
PLAZA Integrative Orthologyregulation of translation AT5G53180
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT5G53180
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT5G53180
GO:0009644
ISO
PLAZA Integrative Orthologyresponse to high light intensity AT5G53170
GO:0006508
IEA
InterProproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G53180
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G53180
GO:0003676
IEA
InterPronucleic acid binding
GO:0004222
IEA
InterPrometalloendopeptidase activity
GO:0004176
IEA
InterProATP-dependent peptidase activity
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
InterProATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT5G53170
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G53170
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G53180
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G53170
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G53180
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G53180
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G53170
GO:0016020
IEA
InterPromembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR034794 PTBPH1/PTBPH2, RNA recognition motif 3
IPR021790 PTBP1, RNA recognition motif 2-like
IPR003959 ATPase, AAA-type, core
IPR037219 Peptidase M41-like
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR041569 AAA ATPase, AAA+ lid domain
IPR034792 PTBPH1/PTBPH2, RNA recognition motif 1
IPR005936 Peptidase, FtsH
IPR034793 PTBPH1/PTBPH2, RNA recognition motif 2
IPR003593 AAA+ ATPase domain
IPR000642 Peptidase M41
Mapman id Description
16.2.6.7 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB)
19.4.5.8.1.1 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.component FtsH4/11