Gene: Nitab4.5_0000080g0240
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0000080g0240
- Transcript Identifier Nitab4.5_0000080g0240.1
- Gene Type Coding gene
- Location Nitab4.5_0000080 : 1271600-1280621 : positive
Gene Family Information
- ID HOM05D000917
- #Genes/#Species 655/100
- Phylogenetic origin
- ID ORTHO05D000764
- #Genes/#Species 624/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Nitab4.5_0000080g0240.1
Descriptions
- Description Zinc finger, CCHC-type, Putative 5-3 exonuclease, 5'-3' exoribonuclease
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006139 | ISO | PLAZA Homology (enrichment) | nucleobase-containing compound metabolic process | HOM05D000917 |
| GO:0010587 | ISO | PLAZA Integrative Orthology | miRNA catabolic process | AT1G54490 |
| GO:0000291 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA catabolic process, exonucleolytic | AT1G54490 |
| GO:0070370 | ISO | PLAZA Integrative Orthology | cellular heat acclimation | AT1G54490 |
| GO:0009826 | ISO | PLAZA Integrative Orthology | unidimensional cell growth | AT1G54490 |
| GO:0051301 | ISO | PLAZA Integrative Orthology | cell division | AT1G54490 |
| GO:0040029 | ISO | PLAZA Integrative Orthology | regulation of gene expression, epigenetic | AT1G54490 |
| GO:0009723 | ISO | PLAZA Integrative Orthology | response to ethylene | AT1G54490 |
| GO:0006402 | ISO | PLAZA Integrative Orthology | mRNA catabolic process | AT1G54490 |
| GO:0009630 | ISO | PLAZA Integrative Orthology | gravitropism | AT1G54490 |
| GO:0009961 | ISO | PLAZA Integrative Orthology | response to 1-aminocyclopropane-1-carboxylic acid | AT1G54490 |
| GO:0009873 | ISO | PLAZA Integrative Orthology | ethylene-activated signaling pathway | AT1G54490 |
| GO:0031087 | ISO | PLAZA Integrative Orthology | deadenylation-independent decapping of nuclear-transcribed mRNA | AT1G54490 |
| GO:0010087 | ISO | PLAZA Integrative Orthology | phloem or xylem histogenesis | AT1G54490 |
| GO:0061014 | ISO | PLAZA Integrative Orthology | positive regulation of mRNA catabolic process | AT1G54490 |
| GO:0010286 | ISO | PLAZA Integrative Orthology | heat acclimation | AT1G54490 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G54490 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G54490 |
| GO:0004534 | ISO | PLAZA Integrative Orthology | 5'-3' exoribonuclease activity | AT1G54490 |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004527 | IEA | InterPro | exonuclease activity | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G54490 |
| GO:0005634 | ISO | PLAZA Homology (enrichment) | nucleus | HOM05D000917 |
| GO:0005844 | ISO | PLAZA Integrative Orthology | polysome | AT1G54490 |
| GO:0000932 | ISO | PLAZA Integrative Orthology | P-body | AT1G54490 |
| GO:0010494 | ISO | PLAZA Integrative Orthology | cytoplasmic stress granule | AT1G54490 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |