Gene: Nitab4.5_0000053g0170
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0000053g0170
- Transcript Identifier Nitab4.5_0000053g0170.1
- Gene Type Coding gene
- Location Nitab4.5_0000053 : 1141376-1154396 : positive
Gene Family Information
- ID HOM05D001026
- #Genes/#Species 592/100
- Phylogenetic origin
- ID ORTHO05D003027
- #Genes/#Species 247/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0000053g0170.1
- SR1-identifier Nta14g16540.1
Descriptions
- Description Glycosyl hydrolase, family 13, all-beta, Glycoside hydrolase, catalytic domain, Glycosyl hydrolase, family 13, catalytic domain, Glycoside hydrolase, family 13, Immunoglobulin E-set, Glycoside hydrolase, family 13, N-terminal, Glycosyl hydrolase, family 13, subfamily, catalytic domain, Immunoglobulin-like fold, Glycoside hydrolase, superfamily
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
| GO:0010021 | ISO | PLAZA Integrative Orthology | amylopectin biosynthetic process | AT2G39930 |
| GO:0005977 | ISO | PLAZA Integrative Orthology | glycogen metabolic process | AT2G39930 |
| GO:0009660 | ISO | PLAZA Integrative Orthology | amyloplast organization | Os09g0469400 |
| GO:0005983 | ISO | PLAZA Integrative Orthology | starch catabolic process | AT4G09020 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0004553 | IEA | InterPro | hydrolase activity, hydrolyzing O-glycosyl compounds | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Os08g0520900 |
| GO:0019156 | ISO | PLAZA Integrative Orthology | isoamylase activity | AT2G39930 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT4G09020 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G39930 |
| GO:0043033 | ISO | PLAZA Integrative Orthology | isoamylase complex | Os08g0520900 |
| GO:0009501 | ISO | PLAZA Integrative Orthology | amyloplast | Os09g0469400 |
| GO:0010368 | ISO | PLAZA Integrative Orthology | chloroplast isoamylase complex | AT2G39930 |
| GO:0009569 | ISO | PLAZA Integrative Orthology | chloroplast starch grain | AT4G09020 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006047 | Glycosyl hydrolase, family 13, catalytic domain |
| IPR013783 | Immunoglobulin-like fold |
| IPR044505 | Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain |
| IPR017853 | Glycoside hydrolase superfamily |
| IPR004193 | Glycoside hydrolase, family 13, N-terminal |
| IPR013780 | Glycosyl hydrolase, all-beta |
| IPR014756 | Immunoglobulin E-set |
| Mapman id | Description |
|---|---|
| 3.2.2.6.1 | Carbohydrate metabolism.starch metabolism.biosynthesis.ISA1-ISA2 isoamylase-type starch debranching complex.component ISA1 |