Gene: Lsat_1_v5_gn_7_87360

General Information

Structural Information

Species Lactuca sativa
Gene Identifier Lsat_1_v5_gn_7_87360
Transcript Identifier Lsat_1_v5_gn_7_87360.1
Gene Type Coding gene
Location Lsat_1_v8_lg_7 : 147520800-147523262 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000561
#Genes/#Species 984/100
Phylogenetic origin

ID ORTHO05D000514
#Genes/#Species 826/99
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Lsat_1_v5_gn_7_87360.v5
pacid 38914318

Descriptions

Short descriptions
Ortholog descriptions

Description PTHR24012:SF403 - POLYADENYLATE-BINDING PROTEIN RBP47A

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0034063	ISO	PLAZA Integrative Orthology	stress granule assembly	AT3G19130

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G19130
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT3G19130

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010494	ISO	PLAZA Integrative Orthology	cytoplasmic stress granule	AT3G19130
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT3G19130

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain

Mapman id	Description
16.8.4	RNA processing.mRNA sequestration.mRNA-binding regulatory factor (RBP45/47)