Gene: Lsat_1_v5_gn_5_19880
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_5_19880
- Transcript Identifier Lsat_1_v5_gn_5_19880.1
- Gene Type Coding gene
- Location Lsat_1_v8_lg_5 : 41518395-41519666 : negative
Gene Family Information
- ID HOM05D000715
- #Genes/#Species 808/100
- Phylogenetic origin
- ID ORTHO05D000024
- #Genes/#Species 3751/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Lsat_1_v5_gn_5_19880.v5
- pacid 38970457
Descriptions
- Description PTHR31089:SF1 - CYCLIC DOF FACTOR 4-RELATED
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT5G62430 |
| GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | AT5G39660 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT5G62430 |
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT5G62430 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT5G62430 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G39660 |
| GO:0000978 | ISO | PLAZA Integrative Orthology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | AT5G62430 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT5G39660 |
| GO:0001227 | ISO | PLAZA Integrative Orthology | DNA-binding transcription repressor activity, RNA polymerase II-specific | AT5G62430 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G62430 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003851 | Zinc finger, Dof-type |
| Mapman id | Description |
|---|---|
| 15.5.1.5 | RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) |