Gene: AT5G62430
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G62430
- Transcript Identifier AT5G62430.1
- Gene Type Coding gene
- Location Chr5 : 25069298-25070787 : negative
Gene Family Information
- ID HOM05D000715
- #Genes/#Species 808/100
- Phylogenetic origin
- ID ORTHO05D000024
- #Genes/#Species 3751/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G62430.1
- symbol CDF1
- uniprot Q8W1E3
Descriptions
- Description cycling DOF factor 1
- Computational description cycling DOF factor 1 (CDF1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 1130 Blast hits to 1085 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1125; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | TAS | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009908 | IEA | GOA Database | flower development | |
| GO:0000122 | IEA | GOA Database | negative regulation of transcription by RNA polymerase II | |
| GO:0010228 | IMP | Gene Ontology | vegetative to reproductive phase transition of meristem | 2 |
| GO:0009658 | IMP | Gene Ontology | chloroplast organization | 3 |
| GO:0048510 | IMP | Gene Ontology | regulation of timing of transition from vegetative to reproductive phase | 4 |
| GO:0045892 | IDA | Gene Ontology | negative regulation of transcription, DNA-templated | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IDA IBA | Gene Ontology | DNA binding | 4 5 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003700 | IDA ISS, IBA | Gene Ontology | DNA-binding transcription factor activity | 1 5 6 |
| GO:0001227 | IDA, IMP | Gene Ontology | DNA-binding transcription repressor activity, RNA polymerase II-specific | 2 |
| GO:0000978 | IDA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 6 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA, IPI | Gene Ontology | nucleus | 2 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003851 | Zinc finger, Dof-type |
| Mapman id | Description |
|---|---|
| 15.5.1.5 | RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) |