Gene: Lj5g0004600
General Information
Structural Information
- Species Lotus japonicus
- Gene Identifier Lj5g0004600
- Transcript Identifier Lj5g0004600.1
- Gene Type Coding gene
- Location chr5 : 4839063-4844865 : positive
Gene Family Information
- ID HOM05D000592
- #Genes/#Species 944/94
- Phylogenetic origin
- ID ORTHO05D001485
- #Genes/#Species 399/91
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Lj5g0004600.Lj1.0v1
- pacid 44924799
Descriptions
- Description KOG0978//KOG1003 - E3 ubiquitin ligase involved in syntaxin degradation // Actin filament-coating protein tropomyosin
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003779 | IEA | InterPro | actin binding | |
| GO:0051015 | ISO | PLAZA Integrative Orthology | actin filament binding | AT3G22790 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G14760 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G22790 |
| GO:0005884 | ISO | PLAZA Integrative Orthology | actin filament | AT3G22790 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT3G22790 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011684 | Protein Networked (NET), actin-binding (NAB) domain |
| Mapman id | Description |
|---|---|
| 20.2.5.1.1 | Cytoskeleton organisation.microfilament network.actin-membrane compartment interaction.NET-type actin-membrane nexus protein families.actin-binding protein (NET1) |