Gene: FvH4_3g18560

General Information

Structural Information

  • Species Fragaria vesca
  • Gene Identifier FvH4_3g18560
  • Transcript Identifier FvH4_3g18560.t1
  • Gene Type Coding gene
  • Location Fvb3 : 11859456-11869926 : negative

Gene Family Information

  • ID HOM05D000366
  • #Genes/#Species 1311/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id FvH4_3g18560.v4.0.a2
  • pacid 50671708

Descriptions

  • Description PF00628//PF16135 - PHD-finger (PHD) // TPL-binding domain in jasmonate signalling (Jas)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044030
ISO
PLAZA Integrative Orthologyregulation of DNA methylation AT3G14980
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT3G14980
GO:0044154
ISO
PLAZA Integrative Orthologyhistone H3-K14 acetylation AT3G14980
GO:0043972
ISO
PLAZA Integrative Orthologyhistone H3-K23 acetylation AT3G14980
GO:0043971
ISO
PLAZA Integrative Orthologyhistone H3-K18 acetylation AT3G14980

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004402
ISO
PLAZA Integrative Orthologyhistone acetyltransferase activity AT3G14980
GO:0010385
ISO
PLAZA Integrative Orthologydouble-stranded methylated DNA binding AT3G14980
GO:0042393
ISO
PLAZA Integrative Orthologyhistone binding AT3G14980

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G14980
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G14980

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032308 Jas TPL-binding domain
IPR019787 Zinc finger, PHD-finger
IPR031086 Increased DNA methylation 1
IPR011011 Zinc finger, FYVE/PHD-type
IPR016181 Acyl-CoA N-acyltransferase
IPR001965 Zinc finger, PHD-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
12.5.3.2.2 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.component IDM1