Gene: FAN05G3452
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN05G3452
- Transcript Identifier FAN05G3452.1
- Gene Type Coding gene
- Location Fvb6-3 : 36721313-36725671 : negative
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004701
- #Genes/#Species 173/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb6-3-augustus-gene-367.51.v1.0.a1
- pacid 50499496
Descriptions
- Description PF00098//PF00176//PF00271//PF08152 - Zinc knuckle (zf-CCHC) // SNF2 family N-terminal domain (SNF2_N) // Helicase conserved C-terminal domain (Helicase_C) // GUCT (NUC152) domain (GUCT)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000373 | ISO | PLAZA Integrative Orthology | Group II intron splicing | AT5G26742 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT5G26742 |
| GO:0042254 | ISO | PLAZA Integrative Orthology | ribosome biogenesis | AT5G26742 |
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT5G26742 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G26742 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT5G26742 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G26742 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G26742 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR001650 | Helicase, C-terminal |
| IPR012562 | GUCT |
| IPR001878 | Zinc finger, CCHC-type |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| Mapman id | Description |
|---|---|
| 16.11.4.1.1.5 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.basal splicing factor (RH3) |