Gene: Duzib116G0294
General Information
Structural Information
- Species Durio zibethinus
- Gene Identifier Duzib116G0294
- Transcript Identifier Duzib116G0294.01
- Gene Type Coding gene
- Location NW_019167949.1 : 3403028-3407234 : negative
Gene Family Information
- ID HOM05D000575
- #Genes/#Species 966/99
- Phylogenetic origin
- ID ORTHO05D003041
- #Genes/#Species 247/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name LOC111314917
- name XM_022916534.1
- pid XP_022772269.1
- id gene-LOC111314917
- uniprot A0A6P6B516
Descriptions
- product serine hydroxymethyltransferase 2, mitochondrial, transcript variant X2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006544 | ISO | PLAZA Integrative Orthology | glycine metabolic process | AT5G26780 |
| GO:0006563 | ISO | PLAZA Integrative Orthology | L-serine metabolic process | AT5G26780 |
| GO:0019264 | IEA | GOA Database | glycine biosynthetic process from serine | |
| GO:0019264 | IEA | InterPro | glycine biosynthetic process from serine | |
| GO:0032259 | IEA | GOA Database | methylation | |
| GO:0006730 | IEA | GOA Database | one-carbon metabolic process | |
| GO:0035999 | IEA | GOA Database | tetrahydrofolate interconversion | |
| GO:0035999 | IEA | InterPro | tetrahydrofolate interconversion |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008168 | IEA | GOA Database | methyltransferase activity | |
| GO:0050897 | ISO | PLAZA Integrative Orthology | cobalt ion binding | AT5G26780 |
| GO:0008270 | ISO | PLAZA Integrative Orthology | zinc ion binding | AT5G26780 |
| GO:0030170 | IEA | GOA Database | pyridoxal phosphate binding | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0004372 | IEA | GOA Database | glycine hydroxymethyltransferase activity | |
| GO:0004372 | IEA | InterPro | glycine hydroxymethyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G26780 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G26780 |
| GO:0005747 | ISO | PLAZA Integrative Orthology | mitochondrial respiratory chain complex I | AT5G26780 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR039429 | Serine hydroxymethyltransferase-like domain |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR001085 | Serine hydroxymethyltransferase |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| Mapman id | Description |
|---|---|
| 1.3.5 | Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM) |