Gene: Cpa.g.c29936.2
General Information
Structural Information
- Species Carica papaya
- Gene Identifier Cpa.g.c29936.2
- Transcript Identifier Cpa.t.c29936.2
- Gene Type Coding gene
- Location contig_29936 : 1834-3346 : negative
Gene Family Information
- ID HOM05D006001
- #Genes/#Species 131/86
- Phylogenetic origin
- ID ORTHO05D006714
- #Genes/#Species 139/88
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 16429753
- tid PAC:16429753
- id gevm.TU.contig_29936.2
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT4G24500 |
| GO:2000012 | ISO | PLAZA Integrative Orthology | regulation of auxin polar transport | AT4G24500 |
| GO:0000380 | ISO | PLAZA Integrative Orthology | alternative mRNA splicing, via spliceosome | AT4G24500 |
| GO:0000381 | ISO | PLAZA Integrative Orthology | regulation of alternative mRNA splicing, via spliceosome | AT4G24500 |
| GO:0009649 | ISO | PLAZA Integrative Orthology | entrainment of circadian clock | AT4G24500 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT4G24500 |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:1901703 | ISO | PLAZA Integrative Orthology | protein localization involved in auxin polar transport | AT4G24500 |
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT4G24500 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT4G24500 |
| GO:1903730 | IEA | InterPro | regulation of phosphatidate phosphatase activity | |
| GO:0035196 | IEA | InterPro | production of miRNAs involved in gene silencing by miRNA |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G24500 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G24500 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G24500 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G24500 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G24500 |
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT4G24500 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039292 | Protein SICKLE |
| Mapman id | Description |
|---|---|
| 35.2 | not assigned.not annotate |