Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 7.8e-203 710.3 370 100.0
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 2.3e-61 240.4 374 46.0
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 3.1e-58 229.9 377 41.9
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 5.1e-53 212.6 389 43.2
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 3.3e-52 209.9 375 42.7
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.1e-51 207.2 378 41.3
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 1.1e-50 204.9 375 45.1
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.2e-49 201.4 383 40.7
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 1.5e-49 201.1 372 41.4
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 4.4e-49 199.5 375 40.0
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 7.6e-49 198.7 401 41.6
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.7e-48 197.6 386 39.9
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 1.4e-47 194.5 401 40.9
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 4.2e-47 193.0 378 41.8
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.3e-45 188.0 375 40.5
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 5.1e-45 186.0 387 39.8
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 3.3e-44 183.3 376 39.9
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 5.6e-44 182.6 371 43.7
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.6e-41 173.7 372 37.6
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.6e-41 173.7 372 37.6
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 9.9e-41 171.8 401 39.7
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 3.8e-40 169.9 371 42.6
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.9e-39 167.5 349 41.5
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 5.5e-39 166.0 424 35.6
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 1.3e-37 161.4 367 35.7
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.8e-37 161.0 370 41.1
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 6.7e-37 159.1 377 39.0
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 4.3e-36 156.4 383 35.2
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 9.6e-36 155.2 375 38.9
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 1.4e-34 151.4 373 36.5
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.4e-34 151.4 398 35.7
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 4.0e-34 149.8 381 34.9
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 5.3e-34 149.4 379 35.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 2.6e-33 147.1 375 36.8
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 7.6e-33 145.6 375 37.3
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.0e-32 145.2 378 36.8
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 4.9e-32 142.9 372 34.7
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 6.5e-32 142.5 380 34.7
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.4e-31 141.4 377 34.2
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.2e-31 139.8 412 34.0
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 5.5e-31 139.4 365 34.5
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.5e-31 139.4 384 37.0
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 1.6e-30 137.9 373 33.8
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 2.1e-30 137.5 371 38.0
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 3.5e-30 136.7 369 33.1
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 6.0e-30 136.0 374 33.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 7.9e-30 135.6 392 33.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.0e-29 135.2 369 34.4
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.3e-29 134.8 376 35.1
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 1.8e-29 134.4 370 33.5
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 3.0e-29 133.7 374 35.3
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 3.0e-29 133.7 374 33.7
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 3.9e-29 133.3 401 32.4
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 3.9e-29 133.3 375 32.0
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.1e-28 131.7 390 34.1
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 3.3e-28 130.2 367 33.0
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 7.4e-28 129.0 389 32.6
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 9.6e-28 128.6 379 33.5
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.3e-27 128.3 372 34.4
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.6e-27 127.9 371 32.9
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.8e-26 124.4 372 33.6
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 1.8e-26 124.4 377 31.8
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.3e-24 118.2 382 35.9
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 2.9e-24 117.1 378 32.5
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 8.4e-24 115.5 389 32.1
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.9e-23 114.4 390 33.1
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.9e-23 114.4 431 35.3
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 3.2e-23 113.6 365 32.9
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 3.2e-23 113.6 373 31.6
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.7e-22 110.5 407 33.4
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 1.0e-21 108.6 378 34.7
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.0e-21 108.6 407 33.4
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 5.1e-21 106.3 389 30.6
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 1.1e-20 105.1 409 33.3
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.9e-20 104.4 383 30.5
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 4.3e-20 103.2 380 30.3
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 7.4e-20 102.4 408 29.4
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 2.2e-19 100.9 362 35.4
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 4.8e-19 99.8 366 30.1
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 4.8e-19 99.8 367 30.2
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.1e-18 98.6 394 31.0
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.4e-18 98.2 366 31.7
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.8e-18 97.8 402 29.4
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 4.1e-18 96.7 417 30.2
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 5.3e-18 96.3 373 33.5
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 9.0e-18 95.5 314 34.1
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 9.0e-18 95.5 435 29.7
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 2.0e-17 94.4 404 30.7
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.6e-17 94.0 377 28.9
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 4.5e-17 93.2 378 33.6
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 5.9e-17 92.8 370 29.2
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.0e-16 92.0 212 36.8
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 5.0e-16 89.7 376 30.9
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 1.4e-15 88.2 412 27.4
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 1.9e-15 87.8 378 29.4
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 9.4e-15 85.5 341 29.0
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 1.6e-14 84.7 435 30.1
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 4.6e-14 83.2 224 35.3
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 1.0e-13 82.0 398 30.2
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 1.4e-13 81.6 373 30.6
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 3.9e-13 80.1 331 31.4
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 5.1e-13 79.7 167 38.3
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 8.8e-13 79.0 434 27.0
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 2.0e-12 77.8 96 50.0
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 7.4e-12 75.9 268 32.1
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.3e-11 75.1 164 40.9
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 6.3e-11 72.8 390 27.9
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.1e-10 72.0 435 28.0
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.1e-10 72.0 82 48.8
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 1.8e-10 71.2 78 48.7
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 2.4e-10 70.9 247 31.2
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 3.1e-10 70.5 141 37.6
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.3e-10 69.7 377 30.0
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 9.1e-10 68.9 440 25.5
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 2.0e-09 67.8 412 29.6
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 5.9e-09 66.2 106 42.5
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 1.7e-08 64.7 69 52.2
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 2.2e-08 64.3 168 32.1
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 8.5e-08 62.4 411 25.1
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 8.5e-08 62.4 114 40.4
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 1.9e-07 61.2 169 33.7
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.5e-07 60.8 80 42.5
AUR62014355 Chenopodium quinoa HOM05D034668 ORTHO05D006714 3.2e-07 60.5 291 30.9
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 4.2e-07 60.1 170 34.1
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 7.2e-07 59.3 89 37.1


User provided reference genes

Program Settings