Gene: CiPaw.02G088000

General Information

Structural Information

  • Species Carya illinoinensis
  • Gene Identifier CiPaw.02G088000
  • Transcript Identifier CiPaw.02G088000.1
  • Gene Type Coding gene
  • Location Chr02 : 24945608-24958981 : negative

Gene Family Information

  • ID HOM05D001283
  • #Genes/#Species 488/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id CiPaw.02G088000.v1.1
  • pacid 45845107
  • locus Caril.02G088800

Descriptions

  • Description KOG0107//KOG0130//KOG4208 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // RNA-binding protein RBM8/Tsunagi (RRM superfamily) // Nucleolar RNA-binding protein NIFK
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT5G18810

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G18810

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G18810
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT5G18810

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003954 RNA recognition motif domain, eukaryote
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.6.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SCL28/30/33)