Gene: Cc06_g21350

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc06_g21350
  • Transcript Identifier Cc06_g21350.1
  • Gene Type Coding gene
  • Location chr6 : 29327677-29333405 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB O22899
  • UniProtKB B9RNA6
  • UniProtKB G7ICV1
  • UniProtKB O35286
  • UniProtKB A5ADC4
  • UniProtKB Q5RAZ4
  • id GSCOCG00018138001

Descriptions

  • Description Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g079250.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IEA
InterProRNA helicase activity
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
InterProhelicase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G47250

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT2G47250
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G62310
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G62310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044756 DHX15, DEXH-box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR007502 Helicase-associated domain
IPR011709 Domain of unknown function DUF1605
IPR003593 AAA+ ATPase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.2.7.3.3 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.Intron-Lariat Spliceosome (ILS) complex.helicase component Prp43