Gene: Cc06_g11970
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc06_g11970
- Transcript Identifier Cc06_g11970.1
- Gene Type Coding gene
- Location chr6 : 9696520-9698969 : negative
Gene Family Information
- ID HOM05D001583
- #Genes/#Species 405/100
- Phylogenetic origin
- ID ORTHO05D001900
- #Genes/#Species 340/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- UniProtKB Q9FJA6
- UniProtKB D7TZU1
- UniProtKB P02350
- UniProtKB D7TCH5
- UniProtKB Q9SIP7
- UniProtKB A9PBQ6
- UniProtKB P79891
- UniProtKB P62909
- UniProtKB P62908
- UniProtKB P47835
- id GSCOCG00041592001
Descriptions
- Description 40S ribosomal protein S3-3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G53870 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015935 | IEA | InterPro | small ribosomal subunit | |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G31610 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G53870 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT3G53870 |
| GO:0022627 | ISO | PLAZA Integrative Orthology | cytosolic small ribosomal subunit | AT3G53870 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G31610 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT2G31610 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G35530 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT2G31610 |
| GO:0042788 | ISO | PLAZA Integrative Orthology | polysomal ribosome | AT3G53870 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015946 | K homology domain-like, alpha/beta |
| IPR004044 | K Homology domain, type 2 |
| IPR036419 | Ribosomal protein S3, C-terminal domain superfamily |
| IPR004087 | K Homology domain |
| IPR005703 | Ribosomal protein S3, eukaryotic/archaeal |
| IPR001351 | Ribosomal protein S3, C-terminal |
| IPR009019 | K homology domain superfamily, prokaryotic type |
| Mapman id | Description |
|---|---|
| 17.1.3.1.3 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS3 |