Gene: Cc02_g22730
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc02_g22730
- Transcript Identifier Cc02_g22730.1
- Gene Type Coding gene
- Location chr2 : 20028364-20032441 : negative
Gene Family Information
- ID HOM05D000575
- #Genes/#Species 966/99
- Phylogenetic origin
- ID ORTHO05D003840
- #Genes/#Species 202/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB Q9SZJ5
- UniProtKB Q54EW1
- UniProtKB Q54Z26
- UniProtKB F6H906
- UniProtKB G7IPE1
- UniProtKB A9PL12
- id GSCOCG00014951001
Descriptions
- Description Serine hydroxymethyltransferase 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT4G13930 |
| GO:0046500 | ISO | PLAZA Integrative Orthology | S-adenosylmethionine metabolic process | AT1G36370 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT1G36370 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT4G13890 |
| GO:0010197 | ISO | PLAZA Integrative Orthology | polar nucleus fusion | AT4G13890 |
| GO:0055063 | ISO | PLAZA Integrative Orthology | sulfate ion homeostasis | AT1G36370 |
| GO:0044030 | ISO | PLAZA Integrative Orthology | regulation of DNA methylation | AT1G36370 |
| GO:0035999 | IEA | InterPro | tetrahydrofolate interconversion | |
| GO:0019264 | IEA | InterPro | glycine biosynthetic process from serine |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G13930 |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0004372 | IEA | InterPro | glycine hydroxymethyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G13930 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G13930 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G13930 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G36370 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR001085 | Serine hydroxymethyltransferase |
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| IPR039429 | Serine hydroxymethyltransferase-like domain |