Gene: Cc00_g24770

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc00_g24770
  • Transcript Identifier Cc00_g24770.1
  • Gene Type Coding gene
  • Location chr0 : 155649746-155651006 : positive

Gene Family Information

  • ID HOM05D000727
  • #Genes/#Species 800/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB D7KJ47
  • UniProtKB Q42344
  • UniProtKB P40619
  • UniProtKB P40620
  • UniProtKB Q40094
  • UniProtKB I1MMW6
  • id GSCOCG00010169001

Descriptions

  • Description HMG1/2-like protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated Zm00001eb271910
GO:0006333
ISO
PLAZA Integrative Orthologychromatin assembly or disassembly AT4G35570

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT4G35570
GO:0030527
ISO
PLAZA Integrative Orthologystructural constituent of chromatin AT4G35570
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding Zm00001eb271910
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT4G35570

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Zm00001eb271910
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G35570
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G35570
GO:0000785
ISO
PLAZA Integrative Orthologychromatin AT4G35570

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036910 High mobility group box domain superfamily
IPR031061 High mobility group protein HMGB, plant
IPR009071 High mobility group box domain
Mapman id Description
12.1.3.1 Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B)