Gene: AT4G35570
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G35570
- Transcript Identifier AT4G35570.1
- Gene Type Coding gene
- Location Chr4 : 16887363-16888184 : negative
Gene Family Information
- ID HOM05D000727
- #Genes/#Species 800/97
- Phylogenetic origin
- ID ORTHO05D000541
- #Genes/#Species 799/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G35570.1
- symbol HMGB5
- Alias HMGD,NFD05,NFD5,NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5
- uniprot O49597
Descriptions
- Description high mobility group B5
- Computational description high mobility group B5 (HMGB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B4 (TAIR:AT2G17560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006333 | TAS | Gene Ontology | chromatin assembly or disassembly | 1 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 2 |
| GO:0003682 | TAS | Gene Ontology | chromatin binding | 1 |
| GO:0030527 | TAS | Gene Ontology | structural constituent of chromatin | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IDA ISS | Gene Ontology | DNA binding | 3 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | Zm00001eb271910 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 4 |
| GO:0000785 | TAS | Gene Ontology | chromatin | 1 |
| GO:0005829 | IDA | Gene Ontology | cytosol | 4 |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.3.1 | Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B) |