Gene: Carub.0008s1107
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0008s1107
- Transcript Identifier Carub.0008s1107.1
- Gene Type Coding gene
- Location scaffold_8 : 6735627-6739721 : positive
Gene Family Information
- ID HOM05D000422
- #Genes/#Species 1214/100
- Phylogenetic origin
- ID ORTHO05D001248
- #Genes/#Species 448/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- id Carub.0008s1107.v1.1
- pacid 39250864
- synonym Carubv10028071m.g
Descriptions
- Description PTHR11638//PTHR11638:SF118 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPD, CHLOROPLASTIC
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034605 | ISO | PLAZA Integrative Orthology | cellular response to heat | Os02g0526400 |
| GO:0065003 | ISO | PLAZA Integrative Orthology | protein-containing complex assembly | AT5G51070 |
| GO:1901002 | ISO | PLAZA Integrative Orthology | positive regulation of response to salt stress | Os02g0526400 |
| GO:1902584 | ISO | PLAZA Integrative Orthology | positive regulation of response to water deprivation | Os02g0526400 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT5G51070 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G51070 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G51070 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR003959 | ATPase, AAA-type, core |
| IPR041546 | ClpA/ClpB, AAA lid domain |
| IPR019489 | Clp ATPase, C-terminal |
| IPR004176 | Clp, repeat (R) domain |
| IPR036628 | Clp, N-terminal domain superfamily |
| IPR003593 | AAA+ ATPase domain |
| IPR001270 | ClpA/B family |
| Mapman id | Description |
|---|---|
| 19.4.2.9.5 | Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.chaperone component ClpD |