Gene: Carub.0007s2466
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0007s2466
- Transcript Identifier Carub.0007s2466.1
- Gene Type Coding gene
- Location scaffold_7 : 9381338-9384508 : negative
Gene Family Information
- ID HOM05D000067
- #Genes/#Species 3957/93
- Phylogenetic origin
- ID ORTHO05D000280
- #Genes/#Species 1201/90
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Carub.0007s2466.v1.1
- pacid 39232569
- synonym Carubv10004436m.g
Descriptions
- Description 4.2.3.46 - Alpha-farnesene synthase / AFS1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016102 | IEA | InterPro | diterpenoid biosynthetic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010333 | IEA | InterPro | terpene synthase activity | |
| GO:0016829 | IEA | InterPro | lyase activity | |
| GO:0000287 | IEA | InterPro | magnesium ion binding | |
| GO:0052578 | ISO | PLAZA Integrative Orthology | alpha-farnesene synthase activity | AT4G16730 |
| GO:0034768 | ISO | PLAZA Integrative Orthology | (E)-beta-ocimene synthase activity | AT4G16730 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR008949 | Isoprenoid synthase domain superfamily |
| IPR001906 | Terpene synthase, N-terminal domain |
| IPR008930 | Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid |
| IPR044814 | Terpene cyclases, class 1, plant |
| IPR005630 | Terpene synthase, metal-binding domain |
| IPR034741 | Terpene cyclase-like 1, C-terminal domain |
| IPR036965 | Terpene synthase, N-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 9.1.4.2 | Secondary metabolism.terpenoids.terpene biosynthesis.mono-/sesquiterpene-/diterpene synthase |