Gene: Carub.0006s3655

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0006s3655
  • Transcript Identifier Carub.0006s3655.1
  • Gene Type Coding gene
  • Location scaffold_6 : 16348617-16351481 : negative

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0006s3655.v1.1
  • pacid 39246762
  • synonym Carubv10000779m.g

Descriptions

  • Description K12614 - ATP-dependent RNA helicase DDX6/DHH1 (DDX6, RCK, DHH1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g094350.4
GO:0016032
ISO
PLAZA Integrative Orthologyviral process AT4G00660
GO:0019048
ISO
PLAZA Integrative Orthologymodulation by virus of host process AT4G00660

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc01g094350.4
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G00660

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
Mapman id Description
16.4.2.6 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA helicase (DHH1/DDX6)