Gene: AT4G00660
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G00660
- Transcript Identifier AT4G00660.2
- Gene Type Coding gene
- Location Chr4 : 274638-277438 : positive
Gene Family Information
- ID HOM05D000250
- #Genes/#Species 1697/100
- Phylogenetic origin
- ID ORTHO05D002850
- #Genes/#Species 258/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G00660.2
- symbol RH8
- Alias ATRH8
- uniprot Q8RV65
Descriptions
- Description RNAhelicase-like 8
- Computational description RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 44948 Blast hits to 43709 proteins in 3097 species: Archae - 707; Bacteria - 21922; Metazoa - 6580; Fungi - 4983; Plants - 2686; Viruses - 56; Other Eukaryotes - 8014 (source: NCBI BLink).
- Computational description RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016032 | IMP | Gene Ontology | viral process | 1 |
| GO:0019048 | IPI | Gene Ontology | modulation by virus of host process | 1 |
| GO:0034063 | IBA | Gene Ontology | stress granule assembly | 2 |
| GO:0033962 | IBA | Gene Ontology | P-body assembly | 2 |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc01g094350.4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003724 | IEA | Gene Ontology | RNA helicase activity | |
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 2 3 4 |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 5 |
| GO:0000932 | IBA | Gene Ontology | P-body | 2 |
| GO:0010494 | IBA | Gene Ontology | cytoplasmic stress granule | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.4.2.6 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA helicase (DHH1/DDX6) |