Gene: Carub.0005s0940
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0005s0940
- Transcript Identifier Carub.0005s0940.1
- Gene Type Coding gene
- Location scaffold_5 : 5559810-5560966 : negative
Gene Family Information
- ID HOM05D000327
- #Genes/#Species 1418/97
- Phylogenetic origin
- ID ORTHO05D000218
- #Genes/#Species 1364/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Carub.0005s0940.v1.1
- pacid 39223789
- synonym Carubv10019096m.g
Descriptions
- Description PF01485//PF13456//PF13923 - IBR domain, a half RING-finger domain (IBR) // Reverse transcriptase-like (RVT_3) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016567 | IEA | InterPro | protein ubiquitination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004523 | IEA | InterPro | RNA-DNA hybrid ribonuclease activity | |
| GO:0004842 | IEA | InterPro | ubiquitin-protein transferase activity | |
| GO:0061630 | ISO | PLAZA Integrative Orthology | ubiquitin protein ligase activity | AT3G43750 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G43750 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G43750 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 19.2.2.1.4.4.4 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA) |