Gene: Carub.0003s2822
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0003s2822
- Transcript Identifier Carub.0003s2822.1
- Gene Type Coding gene
- Location scaffold_3 : 11654232-11657644 : positive
Gene Family Information
- ID HOM05D002023
- #Genes/#Species 327/100
- Phylogenetic origin
- ID ORTHO05D002049
- #Genes/#Species 323/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Carub.0003s2822.v1.1
- pacid 39239328
- synonym Carubv10013667m.g
Descriptions
- Description 2.6.1.83 - LL-diaminopimelate aminotransferase / LL-diaminopimelate transaminase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009058 | IEA | InterPro | biosynthetic process | |
| GO:0009627 | ISO | PLAZA Integrative Orthology | systemic acquired resistance | AT2G13810 |
| GO:0010150 | ISO | PLAZA Integrative Orthology | leaf senescence | AT2G13810 |
| GO:0062034 | ISO | PLAZA Integrative Orthology | L-pipecolic acid biosynthetic process | AT2G13810 |
| GO:0009862 | ISO | PLAZA Integrative Orthology | systemic acquired resistance, salicylic acid mediated signaling pathway | AT2G13810 |
| GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT2G13810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008483 | IEA | InterPro | transaminase activity | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0062045 | ISO | PLAZA Integrative Orthology | L-lysine alpha-aminotransferase | AT2G13810 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT2G13810 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR019942 | LL-diaminopimelate aminotransferase/aminotransferase ALD1 |
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR004839 | Aminotransferase, class I/classII |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| Mapman id | Description |
|---|---|
| 26.9.3.1.5.1 | External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.aminotransferase (ALD1) |