Gene: Carub.0003s1838
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0003s1838
- Transcript Identifier Carub.0003s1838.1
- Gene Type Coding gene
- Location scaffold_3 : 6520680-6523853 : negative
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D003522
- #Genes/#Species 219/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0003s1838.v1.1
- pacid 39240178
- synonym Carubv10013346m.g
Descriptions
- Description K13179 - ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] (DDX18, HAS1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc03g114370.4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003724 | IEA | InterPro | RNA helicase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G18600 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR025313 | Domain of unknown function DUF4217 |
| IPR001650 | Helicase, C-terminal |
| IPR044773 | DDX18/Has1, DEAD-box helicase domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |