Gene: Carub.0003s1123

General Information

Structural Information

Species Capsella rubella
Gene Identifier Carub.0003s1123
Transcript Identifier Carub.0003s1123.1
Gene Type Coding gene
Location scaffold_3 : 3856668-3864785 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000279
#Genes/#Species 1569/99
Phylogenetic origin

ID ORTHO05D000957
#Genes/#Species 539/98
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Carub.0003s1123.v1.1
pacid 39242821
synonym Carubv10015199m.g

Descriptions

Short descriptions
Ortholog descriptions

Description K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016579	IEA	InterPro	protein deubiquitination
GO:2000280	ISO	PLAZA Integrative Orthology	regulation of root development	AT3G11910
GO:0031647	ISO	PLAZA Integrative Orthology	regulation of protein stability	AT3G11910
GO:0009867	ISO	PLAZA Integrative Orthology	jasmonic acid mediated signaling pathway	AT3G11910
GO:0010078	ISO	PLAZA Integrative Orthology	maintenance of root meristem identity	AT3G11910
GO:0070646	ISO	PLAZA Integrative Orthology	protein modification by small protein removal	AT3G11910

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0004843	IEA	InterPro	thiol-dependent deubiquitinase

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G11910
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT3G11910
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT3G11910
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT3G11910

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR029346	Ubiquitin carboxyl-terminal hydrolase, C-terminal
IPR002083	MATH/TRAF domain
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR008974	TRAF-like
IPR038765	Papain-like cysteine peptidase superfamily
IPR024729	Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain

Mapman id	Description
14.6.2.3	DNA damage response.nucleotide excision repair (NER).transcription-coupled nucleotide excision repair (TC-NER).deubiquitinase (UBP12-13)
19.2.3.1.1.5	Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.UBP deubiquitinase activities.deubiquitinase (UBP12-13)