Gene: Carub.0002s1390
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0002s1390
- Transcript Identifier Carub.0002s1390.1
- Gene Type Coding gene
- Location scaffold_2 : 8641788-8645941 : positive
Gene Family Information
- ID HOM05D000208
- #Genes/#Species 1933/98
- Phylogenetic origin
- ID ORTHO05D000130
- #Genes/#Species 1771/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0002s1390.v1.1
- pacid 39244410
- synonym Carubv10019745m.g
Descriptions
- Description PTHR11771//PTHR11771:SF60 - LIPOXYGENASE // LIPOXYGENASE 6, CHLOROPLASTIC
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009695 | ISO | PLAZA Integrative Orthology | jasmonic acid biosynthetic process | AT1G67560 |
| GO:0034440 | ISO | PLAZA Integrative Orthology | lipid oxidation | AT1G67560 |
| GO:0009611 | ISO | PLAZA Integrative Orthology | response to wounding | AT1G67560 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0016702 | IEA | InterPro | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0016491 | IEA | InterPro | oxidoreductase activity | |
| GO:0016165 | ISO | PLAZA Integrative Orthology | linoleate 13S-lipoxygenase activity | AT1G67560 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT1G67560 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR042057 | Plant lipoxygenase, PLAT/LH2 domain |
| IPR001024 | PLAT/LH2 domain |
| IPR013819 | Lipoxygenase, C-terminal |
| IPR001246 | Lipoxygenase, plant |
| IPR000907 | Lipoxygenase |
| IPR027433 | Lipoxygenase, domain 3 |
| IPR036226 | Lipoxigenase, C-terminal domain superfamily |
| IPR036392 | PLAT/LH2 domain superfamily |
| Mapman id | Description |
|---|---|
| 11.7.1.2 | Phytohormone action.jasmonic acid.biosynthesis.13-lipoxygenase (LOX) |