Gene: Carub.0001s0139

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0001s0139
  • Transcript Identifier Carub.0001s0139.1
  • Gene Type Coding gene
  • Location scaffold_1 : 485848-487555 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • id Carub.0001s0139.v1.1
  • pacid 39229023
  • synonym Carubv10009652m.g

Descriptions

  • Description PTHR12565//PTHR12565:SF87 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR ALC-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009738
ISO
PLAZA Integrative Orthologyabscisic acid-activated signaling pathway AT1G02340
GO:0009585
ISO
PLAZA Integrative Orthologyred, far-red light phototransduction AT1G02340
GO:0007165
ISO
PLAZA Integrative Orthologysignal transduction AT1G02340
GO:0010218
ISO
PLAZA Integrative Orthologyresponse to far red light AT1G02340
GO:0009642
ISO
PLAZA Integrative Orthologyresponse to light intensity AT1G02340
GO:0009785
ISO
PLAZA Integrative Orthologyblue light signaling pathway AT1G02340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
InterProprotein dimerization activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G02340
GO:0003712
ISO
PLAZA Integrative Orthologytranscription coregulator activity AT1G02340
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G02340

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G02340
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G02340

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR031066 Basic helix-loop-helix (bHLH) transcription factors ALC-like, plant
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)