Gene: AT1G02340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G02340
  • Transcript Identifier AT1G02340.1
  • Gene Type Coding gene
  • Location Chr1 : 465933-467685 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT1G02340.1
  • symbol HFR1
  • Alias FBI1,REP1,REDUCED PHYTOCHROME SIGNALING 1,RSF1,REDUCED SENSITIVITY TO FAR-RED LIGHT 1
  • full_name LONG HYPOCOTYL IN FAR-RED
  • uniprot Q9FE22

Descriptions

  • Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  • Computational description LONG HYPOCOTYL IN FAR-RED (HFR1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3 (TAIR:AT1G09530.2); Has 1715 Blast hits to 1709 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 1707; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010017
IEA
GOA Databasered or far-red light signaling pathway
GO:0009585
IEA
GOA Databasered, far-red light phototransduction
GO:0009585
TAS
Gene Ontologyred, far-red light phototransduction1
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0009738
IMP
Gene Ontologyabscisic acid-activated signaling pathway2
GO:0010218
IDA
Gene Ontologyresponse to far red light3
GO:0009785
TAS
Gene Ontologyblue light signaling pathway4
GO:0009642
IEP
Gene Ontologyresponse to light intensity4
GO:0007165
TAS
Gene Ontologysignal transduction5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003712
IMP
Gene Ontologytranscription coregulator activity6
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding7
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity8
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
TAS
Gene Ontologynucleus4 5 9
GO:0005829
IDA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR031066 Basic helix-loop-helix (bHLH) transcription factors ALC-like, plant
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)