Gene: CSS0032127
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0032127
- Transcript Identifier CSS0032127.1
- Gene Type Coding gene
- Location Chr2 : 25471115-25477779 : positive
Gene Family Information
- ID HOM05D000575
- #Genes/#Species 966/99
- Phylogenetic origin
- ID ORTHO05D003041
- #Genes/#Species 247/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid CSS0032127.1
Descriptions
- Description PREDICTED: serine hydroxymethyltransferase, mitochondrial isoform X2 [Nicotiana tomentosiformis]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009626 | ISO | PLAZA Integrative Orthology | plant-type hypersensitive response | AT4G37930 |
| GO:0019464 | ISO | PLAZA Integrative Orthology | glycine decarboxylation via glycine cleavage system | AT4G37930 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT4G37930 |
| GO:0006544 | ISO | PLAZA Integrative Orthology | glycine metabolic process | AT4G37930 |
| GO:0009416 | ISO | PLAZA Integrative Orthology | response to light stimulus | AT4G37930 |
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT4G37930 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT4G37930 |
| GO:0006563 | ISO | PLAZA Integrative Orthology | L-serine metabolic process | AT4G37930 |
| GO:0009853 | ISO | PLAZA Integrative Orthology | photorespiration | AT4G37930 |
| GO:0035999 | IEA | InterPro | tetrahydrofolate interconversion | |
| GO:0019264 | IEA | InterPro | glycine biosynthetic process from serine |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G37930 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G37930 |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0008266 | ISO | PLAZA Integrative Orthology | poly(U) RNA binding | AT4G37930 |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0004372 | IEA | InterPro | glycine hydroxymethyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G37930 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT4G37930 |
| GO:0048046 | ISO | PLAZA Integrative Orthology | apoplast | AT4G37930 |
| GO:0010319 | ISO | PLAZA Integrative Orthology | stromule | AT4G37930 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G37930 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G37930 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | AT4G37930 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT4G37930 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT4G37930 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR001085 | Serine hydroxymethyltransferase |
| IPR039429 | Serine hydroxymethyltransferase-like domain |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| Mapman id | Description |
|---|---|
| 1.3.5 | Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM) |