Gene: COL.COLO4_35768

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_35768
  • Transcript Identifier COL.rna34456
  • Gene Type Coding gene
  • Location AWUE01022790.1 : 10023-11702 : positive

Gene Family Information

  • ID HOM05D001612
  • #Genes/#Species 400/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna34456
  • GenBank OMO56142.1
  • id gene35740
  • gene_name COLO4_35768
  • uniprot A0A1R3GDJ1

Descriptions

  • Description Aminoacyl-tRNA synthetase, class 1a, anticodon-binding protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006417
ISO
PLAZA Integrative Orthologyregulation of translation Zm00001eb063470
GO:0006423
ISO
PLAZA Homology (enrichment)cysteinyl-tRNA aminoacylation HOM05D001612
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT5G38830
GO:0043067
ISO
PLAZA Integrative Orthologyregulation of programmed cell death AT2G31170
GO:0042407
ISO
PLAZA Integrative Orthologycristae formation AT2G31170
GO:0010197
ISO
PLAZA Integrative Orthologypolar nucleus fusion AT2G31170
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004817
ISO
PLAZA Homology (enrichment)cysteine-tRNA ligase activity HOM05D001612
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G38830
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT2G31170
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast Zm00001eb063470
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT2G31170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032678 tRNA synthetases class I, catalytic domain
IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase
IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
Mapman id Description
17.2.5 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase