Gene: COL.COLO4_35314

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_35314
  • Transcript Identifier COL.rna34003
  • Gene Type Coding gene
  • Location AWUE01022528.1 : 84445-88285 : positive

Gene Family Information

  • ID HOM05D000575
  • #Genes/#Species 966/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna34003
  • GenBank OMO57516.1
  • id gene35286
  • gene_name COLO4_35314
  • uniprot A0A1R3GHG2

Descriptions

  • Description Serine hydroxymethyltransferase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019264
IEA
GOA Databaseglycine biosynthetic process from serine
GO:0019264
IEA
InterProglycine biosynthetic process from serine
GO:0006544
ISO
PLAZA Integrative Orthologyglycine metabolic process AT5G26780
GO:0006563
ISO
PLAZA Integrative OrthologyL-serine metabolic process AT5G26780
GO:0035999
IEA
GOA Databasetetrahydrofolate interconversion
GO:0035999
IEA
InterProtetrahydrofolate interconversion
GO:0032259
IEA
GOA Databasemethylation
GO:0006730
IEA
GOA Databaseone-carbon metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050897
ISO
PLAZA Integrative Orthologycobalt ion binding AT5G26780
GO:0008270
ISO
PLAZA Integrative Orthologyzinc ion binding AT5G26780
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0030170
IEA
GOA Databasepyridoxal phosphate binding
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0004372
IEA
GOA Databaseglycine hydroxymethyltransferase activity
GO:0004372
IEA
InterProglycine hydroxymethyltransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G26780
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G26780
GO:0005747
ISO
PLAZA Integrative Orthologymitochondrial respiratory chain complex I AT5G26780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001085 Serine hydroxymethyltransferase
IPR039429 Serine hydroxymethyltransferase-like domain
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
Mapman id Description
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM)