Gene: COL.COLO4_27533

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_27533
  • Transcript Identifier COL.rna26259
  • Gene Type Coding gene
  • Location AWUE01019628.1 : 95515-100823 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna26259
  • GenBank OMO72649.1
  • id gene27505
  • gene_name COLO4_27533
  • uniprot A0A1R3HQH6

Descriptions

  • Description SNF2-related protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071494
ISO
PLAZA Integrative Orthologycellular response to UV-C AT2G02090
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc02g014770.3
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT2G02090

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G02090
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc02g014770.3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000330 SNF2, N-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.6.1 Chromatin organisation.nucleosome remodeling.ETL1 chromatin remodeling complex.ATPase component Etl1