Gene: AT2G02090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G02090
  • Transcript Identifier AT2G02090.1
  • Gene Type Coding gene
  • Location Chr2 : 523481-526884 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G02090.1
  • symbol ETL1
  • uniprot Q9ZUL5

Descriptions

  • Description SNF2 domain-containing protein / helicase domain-containing protein
  • Computational description ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006974
IEP
Gene Ontologycellular response to DNA damage stimulus1
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc02g014770.3
GO:0043044
IBA
GOA DatabaseATP-dependent chromatin remodeling
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0006325
IEA
GOA Databasechromatin organization
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006338
IBA
Gene Ontologychromatin remodeling2
GO:0071494
IEP
Gene Ontologycellular response to UV-C3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc02g014770.3
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding2
GO:0003682
IBA
Gene Ontologychromatin binding2
GO:0008094
IBA
Gene OntologyATPase, acting on DNA2
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038718 SNF2-like, N-terminal domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000330 SNF2, N-terminal
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.6.1 Chromatin organisation.nucleosome remodeling.ETL1 chromatin remodeling complex.ATPase component Etl1