Gene: COL.COLO4_26982

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_26982
  • Transcript Identifier COL.rna25709
  • Gene Type Coding gene
  • Location AWUE01019414.1 : 8416-13438 : negative

Gene Family Information

  • ID HOM05D001257
  • #Genes/#Species 497/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna25709
  • GenBank OMO73608.1
  • id gene26954
  • gene_name COLO4_26982
  • uniprot A0A1R3HTH0

Descriptions

  • Description RNA polymerase sigma-70
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071482
ISO
PLAZA Integrative Orthologycellular response to light stimulus AT2G36990
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light AT1G08540
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT1G08540
GO:0009637
ISO
PLAZA Integrative Orthologyresponse to blue light AT1G08540
GO:0006399
ISO
PLAZA Integrative OrthologytRNA metabolic process AT1G08540
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT2G36990
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT2G36990
GO:2001141
ISO
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT1G08540
GO:0071483
ISO
PLAZA Integrative Orthologycellular response to blue light AT2G36990
GO:2000142
IEA
GOA Databaseregulation of DNA-templated transcription, initiation
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0016987
IEA
GOA Databasesigma factor activity
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT2G36990
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G36990

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007630 RNA polymerase sigma-70 region 4
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR000943 RNA polymerase sigma-70
IPR013324 RNA polymerase sigma factor, region 3/4-like
IPR007627 RNA polymerase sigma-70 region 2
IPR002885 Pentatricopeptide repeat
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR007624 RNA polymerase sigma-70 region 3
IPR014284 RNA polymerase sigma-70 like domain
IPR013325 RNA polymerase sigma factor, region 2
Mapman id Description
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)