Gene: COL.COLO4_23716

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_23716
  • Transcript Identifier COL.rna22456
  • Gene Type Coding gene
  • Location AWUE01018334.1 : 21085-25531 : negative

Gene Family Information

  • ID HOM05D002519
  • #Genes/#Species 269/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna22456
  • GenBank OMO81180.1
  • id gene23688
  • gene_name COLO4_23716
  • uniprot A0A1R3IF34

Descriptions

  • Description Transcription initiation factor IIF, beta subunit
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006366
IEA
GOA Databasetranscription by RNA polymerase II
GO:0006366
IEA
InterProtranscription by RNA polymerase II
GO:0006367
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005674
IEA
GOA Databasetranscription factor TFIIF complex
GO:0005674
IEA
InterProtranscription factor TFIIF complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR003196 Transcription initiation factor IIF, beta subunit
IPR040450 TFIIF beta subunit, HTH domain
IPR036390 Winged helix DNA-binding domain superfamily
Mapman id Description
15.3.3.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta