Gene: COL.COLO4_18013

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_18013
  • Transcript Identifier COL.rna16777
  • Gene Type Coding gene
  • Location AWUE01016406.1 : 5776-9364 : positive

Gene Family Information

  • ID HOM05D000560
  • #Genes/#Species 984/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna16777
  • GenBank OMO91927.1
  • id gene17985
  • gene_name COLO4_18013
  • uniprot A0A1R3JAW2

Descriptions

  • Description Mechanosensitive ion channel MscS
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0055085
IEA
GOA Databasetransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport
GO:0009859
ISO
PLAZA Integrative Orthologypollen hydration AT2G17010
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT2G17010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008381
ISO
PLAZA Integrative Orthologymechanosensitive ion channel activity AT2G17010

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0012505
ISO
PLAZA Integrative Orthologyendomembrane system AT2G17010
GO:0090406
ISO
PLAZA Integrative Orthologypollen tube AT2G17010

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006685 Mechanosensitive ion channel MscS
IPR010920 LSM domain superfamily
IPR023408 Mechanosensitive ion channel MscS domain superfamily
IPR016688 Mechanosensitive ion channel MscS-like, plants/fungi
Mapman id Description
24.3.5 Solute transport.channels.mechanosensitive ion channel (MSL)