Gene: COL.COLO4_11002

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_11002
  • Transcript Identifier COL.rna9795
  • Gene Type Coding gene
  • Location AWUE01014614.1 : 26703-28841 : positive

Gene Family Information

  • ID HOM05D002336
  • #Genes/#Species 290/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna9795
  • GenBank OMP02563.1
  • id gene10974
  • gene_name COLO4_11002
  • uniprot A0A1R3K635

Descriptions

  • Description RNA polymerase II, Rpb4
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044237
IEA
GOA Databasecellular metabolic process
GO:0044237
IEA
InterProcellular metabolic process
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006366
ISO
PLAZA Integrative Orthologytranscription by RNA polymerase II AT5G09920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0030880
IEA
GOA DatabaseRNA polymerase complex
GO:0030880
IEA
InterProRNA polymerase complex
GO:0005665
ISO
PLAZA Integrative OrthologyRNA polymerase II, core complex AT5G09920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038324 Rpb4/RPC9 superfamily
IPR006590 RNA polymerase Rpb4/RPC9, core
IPR010997 HRDC-like superfamily
IPR005574 RNA polymerase subunit RPB4/RPC9
Mapman id Description
15.1.6.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 4