Gene: COL.COLO4_06900

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_06900
  • Transcript Identifier COL.rna5714
  • Gene Type Coding gene
  • Location AWUE01012981.1 : 14597-18706 : negative

Gene Family Information

  • ID HOM05D002647
  • #Genes/#Species 259/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna5714
  • GenBank OMP07958.1
  • id gene6872
  • gene_name COLO4_06900
  • uniprot A0A1R3KLS4

Descriptions

  • Description Zinc finger, ZZ-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT4G16420
GO:0042127
ISO
PLAZA Integrative Orthologyregulation of cell population proliferation AT4G16420
GO:0009735
ISO
PLAZA Integrative Orthologyresponse to cytokinin AT4G16420
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G16420
GO:0016571
ISO
PLAZA Integrative Orthologyhistone methylation AT4G16420
GO:0035065
IEA
GOA Databaseregulation of histone acetylation
GO:0035065
IEA
InterProregulation of histone acetylation
GO:0045893
IEA
GOA Databasepositive regulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G16420
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003713
IEA
GOA Databasetranscription coactivator activity
GO:0003713
IEA
InterProtranscription coactivator activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016827 Transcriptional adaptor 2
IPR009057 Homeobox-like domain superfamily
IPR034318 Transcriptional adapter ADA2, plants
IPR017930 Myb domain
IPR000433 Zinc finger, ZZ-type
IPR001005 SANT/Myb domain
IPR043145 Zinc finger, ZZ-type superfamily
IPR041983 ADA2-like, zinc finger, ZZ-type
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
15.3.4.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA2