Gene: COL.COLO4_06748

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_06748
  • Transcript Identifier COL.rna5562
  • Gene Type Coding gene
  • Location AWUE01012879.1 : 985-13367 : negative

Gene Family Information

  • ID HOM05D000924
  • #Genes/#Species 651/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna5562
  • GenBank OMP08132.1
  • id gene6720
  • gene_name COLO4_06748
  • uniprot A0A1R3KM22

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G20960
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G20960

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G20960
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G61140

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G42270
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G20960
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G20960

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR004179 Sec63 domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR035892 C2 domain superfamily
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
IPR036390 Winged helix DNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated