Gene: CBR_g12258

General Information

Structural Information

  • Species Chara braunii
  • Gene Identifier CBR_g12258
  • Transcript Identifier GBG72690
  • Gene Type Coding gene
  • Location BFEA01000170 : 1132214-1137794 : negative

Gene Family Information

  • ID HOM05D003145
  • #Genes/#Species 218/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid GBG72690
  • uniprot A0A388KRJ4

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G51300
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G51300
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0045131
IEA
GOA Databasepre-mRNA branch point binding
GO:0045131
IEA
InterPropre-mRNA branch point binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G51300
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G51300
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR032570 Splicing factor 1, helix-hairpin domain
IPR031150 BBP/SF1 family
IPR036612 K Homology domain, type 1 superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR001878 Zinc finger, CCHC-type
IPR004087 K Homology domain
IPR036875 Zinc finger, CCHC-type superfamily
IPR004088 K Homology domain, type 1
IPR045071 KH domain-containing BBP-like
Mapman id Description
16.2.1.2.9 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SF1)